ABOUT THIS RECORDspecies: Bruguiera gymnorhiza
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCATCATCATCATCTTCG miRNA* CAGAGATCGTTGTGAGGGAG mismatches: 5 bulges: 1 |
pre-miRNA
ACAATCCTTGTATACCTCTTCTTCTTCTTCTTCTTCATCATCATCATCTTCGTCTTCATCTAGGGTTTCTCGTGAATCTTCCTTTCTCTCTTCTTTCTCC
ACATCAGGGGTATGCAGAGCAAGTCAAGTGGTTGAGTTGTTCCCTGCCATGTCTCCAGAGATCGTTGTGAGGGAGGCAAGGATAGAAGATTGTTGGGAAG
TGG
dot-bracket secondary structure
.((.((((...(((..((((((((((..((((((((((.((.(((.(((.......(((.(((((...((((.....(((.(((.((((.......((((
......)))).....)))).)))..)))....)))).....)))))..))).....)))))).)).))))))))))..)))).)))))).))).))))..
)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACAATCCTTGTATACCTCTTCTTCTTCTTCTTCTTCATCATCATCATCTTCGTCTTCATCTAGGGTTTCTCGTGAATCTTCCTTTCTCTCTTCTTTCTCC
ACATCAGGGGTATGCAGAGCAAGTCAAGTGGTTGAGTTGTTCCCTGCCATGTCTCCAGAGATCGTTGTGAGGGAGGCAAGGATAGAAGATTGTTGGGAAG
TGG
dot-bracket secondary structure
.((.((((...(((..((((((((((..((((((((((.((.(((.(((.......(((.(((((...((((.....(((.(((.((((.......((((
......)))).....)))).)))..)))....)))).....)))))..))).....)))))).)).))))))))))..)))).)))))).))).))))..
)).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
