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ABOUT THIS RECORD

ID: MNEST002858
species: Bruguiera gymnorhiza
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTG

miRNA*
 GTTCAATAAAGCTGTGGGAAG

mismatches: 1
bulges: 0
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pre-miRNA
 CAAATGAGTGAATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTCTTAGATTTGTTTTTGCATGCCACGGTTTCTGGCTGGACGACTTG
TGGATTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAGGGTCAGGGAAGTTCTG

dot-bracket secondary structure
............(((((((.((((((((.((((((((((((.((((((((((..(((..((.((((((......((((.......)))).)))))).)).
.)))..)))))))))).)))))))))))).)))))))).))))))).(((...))).


SIMILARITIES
miRBase tcc-MIR396b: 6e-16

PMRD ath-miRf11010-akr: 6e-16

microPC miR396: 9e-52		UniProt no hits

RFAM MIR396: 0.0000000000002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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