miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST002860
species: Bruguiera gymnorhiza
miRNA family: MIRf459
source: miRNEST

Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTTTGTATTCTTCCACAGCTT

miRNA*
 GCTGTGGGAAGATACAGACAG

mismatches: 2
bulges: 0
View larger
pre-miRNA
 CAAATGAGTGAATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTCTTAGATTTGTTTTTGCATGCCACGGTTTCTGGCTGGACGACTTG
TGGATTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAGGGTCAGGGAAGTTCTG

dot-bracket secondary structure
............(((((((.((((((((.((((((((((((.((((((((((..(((..((.((((((......((((.......)))).)))))).)).
.)))..)))))))))).)))))))))))).)))))))).))))))).(((...))).


SIMILARITIES
miRBase tcc-MIR396b: 6e-16

PMRD ath-miRf11010-akr: 6e-16

microPC miR396: 9e-52		UniProt no hits

RFAM MIR396: 0.0000000000002		most similar mature miRNAs

Identical with: miR396 from microPC (MNEST045339)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;