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ABOUT THIS RECORD

ID: MNEST002860
species: Bruguiera gymnorhiza
miRNA family: MIRf459
source: miRNEST

Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTTTGTATTCTTCCACAGCTT

miRNA*
 GCTGTGGGAAGATACAGACAG

mismatches: 2
bulges: 0
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pre-miRNA
 GCAAATGAGTGAATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTCTTAGATTTGTTTTTGCATGCCACGGTTTCTGGCTGGACGACTTG
TGGATTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAGGGTCAGGGAAGTTCTG

dot-bracket secondary structure
)............(((((((.((((((((.((((((((((((.((((((((((..(((..((.((((((......((((.......)))).)))))).)).
.)))..)))))))))).)))))))))))).)))))))).))))))).(((...))).


SIMILARITIES
miRBase tcc-MIR396b: 6.0E-16

PMRD ath-miRf11010-akr: 6.0E-16

microPC miR396: 9.0E-52		UniProt no hits

RFAM 6MIR396: 2.0E-13		most similar mature miRNAs

Identical with: miR396 from microPC (MNEST045339)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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