ABOUT THIS RECORDspecies: Carica papaya
miRNA family: MIRf493
source: miRNEST
Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCGGACCAGGCTTCATTCCC miRNA* GAATGTTGTTTGGCTCGAGGT mismatches: 3 bulges: 0 |
pre-miRNA
TTCTGAGAGGTGGAGGTTAATGGGAATGTTGTTTGGCTCGAGGTCATCTGTGATAACCTCTGAAATTTTCTTAGGGGCCTTTTTACTTTCCCGGAAAATT
TCTGCATCTACATACCTCTAGTTGATCTCGGACCAGGCTTCATTCCCGTCAACCGAACACTTCTTTC
dot-bracket secondary structure
....((((((((..((((.(((((((((..((((((.(((((((((.(((...........((((((((((..((((...........))))))))))))
))................))).))))))))).))))))..))))))))).))))...))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCTGAGAGGTGGAGGTTAATGGGAATGTTGTTTGGCTCGAGGTCATCTGTGATAACCTCTGAAATTTTCTTAGGGGCCTTTTTACTTTCCCGGAAAATT
TCTGCATCTACATACCTCTAGTTGATCTCGGACCAGGCTTCATTCCCGTCAACCGAACACTTCTTTC
dot-bracket secondary structure
....((((((((..((((.(((((((((..((((((.(((((((((.(((...........((((((((((..((((...........))))))))))))
))................))).))))))))).))))))..))))))))).))))...))))))))..
SIMILARITIES| miRBase csi-MIR166b: 0.000000000002 PMRD zma-miR166n: 0.00000003 microPC miR166: 0.0000005 | UniProt no hits RFAM mir-166: 9e-71 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
