miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST002877
species: Carica papaya
miRNA family: MIR397
source: miRNEST

Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGTGCAGCATTGATGATT

miRNA*
 CTTCATTGATGACTGCTTCAACG

mismatches: 1
bulges: 2
View larger
pre-miRNA
 AGAGCTCCTCGTTGAGTGCAGCATTGATGATTCGAAGCATGTAGGTCTTGCCGGATTCTACTGTTAGTGTGTAGCCTCGCAAATAATTAAGCATCTTCAT
CATTCTGCTGTATGAAAAAAAACGTGACTGATTAACCATGAAAACTGCAACTATAAGATGTATATATGAGTACTCTTGTGATGAGCAGCTTGGGACAGGC
CCTGGCAAGCCATTGATGGTACGAGCGTCAGGGACTTTAGGGGCGAACCCTGACTTTCAGATCTTCATTGATGACTGCTTCAACGTCGGATTT

dot-bracket secondary structure
.....(((.(((((((.(((((((((((((.((((((......((((((...((.((.(((((((((((.((.(((..((......((((((...(((((
(((..(((..((((......................))))......))).....((((.((((......))))))))))))))))..)))))).....))
...)))..))))))))))))).))...)).))))))((((((.....)))))).)))).))...))))))))).)))))))))))..)))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|O80434|LAC4_ARATH: 0.0000000003

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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