ABOUT THIS RECORDspecies: Capsicum annuum
miRNA family: MIR164
source: miRNEST
Taxonomy by NCBI:
Capsicum annuum Capsicum Capsiceae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CACGTGTTCTGCTTCCCCAAC mismatches: 1 bulges: 0 |
pre-miRNA
GTAGCTCTAGTTGGAGAAGCAGGGCACGTGCAAGTTCTTGAATTTGAAGATATGTGTATTTTTCATGCATGAATCTTGCACGTGTTCTGCTTCCCCAACC
TGAGTTT
dot-bracket secondary structure
...((((..(((((.((((((((((((((((((((((.((....((((((.........))))))..)).))).))))))))))))))))))).))))).
.))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAGCTCTAGTTGGAGAAGCAGGGCACGTGCAAGTTCTTGAATTTGAAGATATGTGTATTTTTCATGCATGAATCTTGCACGTGTTCTGCTTCCCCAACC
TGAGTTT
dot-bracket secondary structure
...((((..(((((.((((((((((((((((((((((.((....((((((.........))))))..)).))).))))))))))))))))))).))))).
.))))..
SIMILARITIES| miRBase tcc-MIR164b: 0.00000000009 PMRD gma-miR164: 0.00000008 microPC miR164: 0.00002 | UniProt no hits RFAM MIR164: 0.0000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
