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ABOUT THIS RECORD
ID:
MNEST002890
species:
Capsicum annuum
miRNA family:
MIR1127
source:
miRNEST
Taxonomy by NCBI:
Capsicum annuum
Capsicum
Capsiceae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAATACTTCCTCCGTCCCATT
miRNA*
TGGGACGGATAGAGTAGTATA
mismatches:
5
bulges:
0
View larger
pre-miRNA
AAATCATAATC
AAATACTTCCTCCGTCCCATT
TTACTTGTTCTATTTTACTTATCAAGCCAAGACAATTTTTTTTTCATTATACCTTTAGTGTAATTGAT
TACTCCTTATTATTAGCATTCTTGAAAAATATTGTAAAGAGTAGTACCGTTAAAAATATATTATTAATTTTTTTTTGTGTTTTGATATTAGTCATCCATT
AATATTGAAACTAACAATAAGACACAATTAAGAGGGGTAAAGTGATAAAGTTATATTATCAATCATTGTTTTTAATAACTGTGTCATTTCAATTTGAGAC
GAATAAAA
TGGGACGGATAGAGTAGTATA
CTATTTAT
dot-bracket secondary structure
...........
...(((((..(((((((((((
(((.(((((............(((((....((((.(..((((.(((((.(((((((....((((((((
(((((.((((((((..((....))...))))..)))).)))))))...(((((.((....)).))))).((((.((((((((((((((((((.....)))
)))))))))))..)))).))))..))))))..))))))).))))).))))..)(((((.(((...)))....)))))....)))).......))))))))
)).)))))
)))))))))..))))).....
........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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