ABOUT THIS RECORDspecies: Carthamus tinctorius
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCTTCTTCCTCTTCCC miRNA* AGAGAGAGAGAGAGAGAGGCA mismatches: 5 bulges: 0 |
pre-miRNA
GAGAGAGAGAGAGAGAGAGGCAGGCAGTTGATTTGATTTCATGGTGGATACTCATCCTCTTCTTCTTCCTCTTCCCATCATCCAT
dot-bracket secondary structure
..(((((.(((((.((((((.((....(((...((....))...)))...))...)))))).))))).)))))............
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAGAGAGAGAGAGAGAGAGGCAGGCAGTTGATTTGATTTCATGGTGGATACTCATCCTCTTCTTCTTCCTCTTCCCATCATCCAT
dot-bracket secondary structure
..(((((.(((((.((((((.((....(((...((....))...)))...))...)))))).))))).)))))............
SIMILARITIES| miRBase zma-MIR166a: 0.001 PMRD zma-miR166a: 0.001 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
