ABOUT THIS RECORDspecies: Carthamus tinctorius
miRNA family: MIRf690
source: miRNEST
Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTTGTTGCAGGATCCATCCC miRNA* GATGGAAATGTCAACAAGGTC mismatches: 4 bulges: 2 |
pre-miRNA
CACCGAAATCGTGATGGAAATGTCAACAAGGTCGAAGCTCTGAAGCGTTACAAATTTAGCTTAGCTTTTGAAAATTCCAATGGGGAAGACTATGTTACCG
AGAAGTTCTTTCAGTCCCTTGTTGCAGGATCCATCCCTGTCGTTGT
dot-bracket secondary structure
((.(((......((((((..((.((((((((..((((((...((((............))))))))))(((((.((((.....))))((((...((....
)).)))).)))))...))))))))))...))))))....))).)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CACCGAAATCGTGATGGAAATGTCAACAAGGTCGAAGCTCTGAAGCGTTACAAATTTAGCTTAGCTTTTGAAAATTCCAATGGGGAAGACTATGTTACCG
AGAAGTTCTTTCAGTCCCTTGTTGCAGGATCCATCCCTGTCGTTGT
dot-bracket secondary structure
((.(((......((((((..((.((((((((..((((((...((((............))))))))))(((((.((((.....))))((((...((....
)).)))).)))))...))))))))))...))))))....))).)).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9FX97|FUT12_ARATH: 3e-18 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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