miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST002895
species: Carthamus tinctorius
miRNA family: MIR162
source: miRNEST

Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGATAAACCTCTGCGTCCAG

miRNA*
 GGAGTCAGCGGTTCATCGATC

mismatches: 4
bulges: 0
View larger
pre-miRNA
 AGTTTGAATTTGTGCGTTTGGTGGAGTTCATTGGAGTCAGCGGTTCATCGATCAGTTCCTCTAACAAACATACGAACAAGGGGGAGAAAGAGAGAGGAATC
GATCGATAAACCTCTGCGTCCAGTGTCCACCCCTGCCGTGCCTTTCCCCAA

dot-bracket secondary structure
)....(((...(((((...((((((...(((((((..(((.((((.(((((((.((((((((..............................)))))))).
))))))).)))).)))..))))))))))))).....)))))..))).....


SIMILARITIES
miRBase osa-MIR162a: 1.0E-7

PMRD osa-miR162a: 1.0E-7

microPC miR162: 5.0E-10		UniProt no hits

RFAM 2MIR162_2: 2.0E-6		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;