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ABOUT THIS RECORD

ID: MNEST002895
species: Carthamus tinctorius
miRNA family: MIR162
source: miRNEST

Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGATAAACCTCTGCGTCCAG

miRNA*
 GGAGTCAGCGGTTCATCGATC

mismatches: 4
bulges: 0
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pre-miRNA
 GTTTGAATTTGTGCGTTTGGTGGAGTTCATTGGAGTCAGCGGTTCATCGATCAGTTCCTCTAACAAACATACGAACAAGGGGGAGAAAGAGAGAGGAATC
GATCGATAAACCTCTGCGTCCAGTGTCCACCCCTGCCGTGCCTTTCCCCAA

dot-bracket secondary structure
....(((...(((((...((((((...(((((((..(((.((((.(((((((.((((((((..............................)))))))).
))))))).)))).)))..))))))))))))).....)))))..))).....


SIMILARITIES
miRBase osa-MIR162a: 0.0000001

PMRD osa-miR162a: 0.0000001

microPC miR162: 0.0000000005		UniProt no hits

RFAM MIR162_2: 0.000002		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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