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ABOUT THIS RECORD

ID: MNEST002899
species: Carthamus tinctorius
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCACA

miRNA*
 TGCTCACTGCTCTATCTGTCACC

mismatches: 1
bulges: 2
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pre-miRNA
 AGTAGTAGTAAAAGTAGTACTTGTTTGGGAGAGAGATAGAGCTGACAGAAGAGAGTGAGCACACAAAGGCAAATTATACCCAAGAGTCTTGTATGATTGTT
TTGGGTGCTCACTGCTCTATCTGTCACCTTCATCCTCCCTTTTATAATTTCTACTTGTTTTTTTGA

dot-bracket secondary structure
)..........((((((...((((..(((.(((.(((.(((.((((((((((((((((((((.(((((...((((((((...........)))))))).))
))).))))))))).)))).))))))).))).)))))))))...))))...))))))..........


SIMILARITIES
miRBase ath-MIR156a: 1.0E-10

PMRD ath-miR156a: 1.0E-10

microPC miR156: 8.0E-43		UniProt no hits

RFAM 6mir-156: 3.0E-9		most similar mature miRNAs

Identical with: miR156 from microPC (MNEST045311)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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