ABOUT THIS RECORDspecies: Carthamus tinctorius
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTGCTCTATCTGTCACC mismatches: 1 bulges: 2 |
pre-miRNA
GTAGTAGTAAAAGTAGTACTTGTTTGGGAGAGAGATAGAGCTGACAGAAGAGAGTGAGCACACAAAGGCAAATTATACCCAAGAGTCTTGTATGATTGTT
TTGGGTGCTCACTGCTCTATCTGTCACCTTCATCCTCCCTTTTATAATTTCTACTTGTTTTTTTGA
dot-bracket secondary structure
..........((((((...((((..(((.(((.(((.(((.((((((((((((((((((((.(((((...((((((((...........)))))))).))
))).))))))))).)))).))))))).))).)))))))))...))))...))))))..........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAGTAGTAAAAGTAGTACTTGTTTGGGAGAGAGATAGAGCTGACAGAAGAGAGTGAGCACACAAAGGCAAATTATACCCAAGAGTCTTGTATGATTGTT
TTGGGTGCTCACTGCTCTATCTGTCACCTTCATCCTCCCTTTTATAATTTCTACTTGTTTTTTTGA
dot-bracket secondary structure
..........((((((...((((..(((.(((.(((.(((.((((((((((((((((((((.(((((...((((((((...........)))))))).))
))).))))))))).)))).))))))).))).)))))))))...))))...))))))..........
SIMILARITIES| miRBase ath-MIR156a: 0.0000000001 PMRD ath-miR156a: 0.0000000001 microPC miR156: 8e-43 | UniProt no hits RFAM mir-156: 0.000000003 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045311) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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