ABOUT THIS RECORDspecies: Carthamus tinctorius
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCATCT miRNA* TATGAAGATGCTGGTGATT mismatches: 3 bulges: 2 |
pre-miRNA
TTGCTACGTTCTCTGATCTTCATCATCATCATCATCATCTTCATCCTCGTGTTTTTCGTACGTCTCCTGCAATTGCTTAGTGGGAGAAACATCTTGCAAG
CCAAGGCATAGTGAGAATGTCTGATCAAATAGCCAAAGGTCAGGAGTTCGAGAAGAAAGCTGAGAAGAAGCTCAATGGTTGGGGATTCTTTGGATCCAAG
TATGAAGATGCTGGTGATTTATATGAAAAAGCTGC
dot-bracket secondary structure
..(((...(((..(((...((((((.((((.((((...(((.((((..((.(((((((.((.((((((((.........)))))))).(((((((((..(
(....))...))))).))))((((((...........))))))..)).)))))))...))...((((((.(((((...)))))..))))))))))..)))
.)))).)))).)))))).)))...)))..)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTGCTACGTTCTCTGATCTTCATCATCATCATCATCATCTTCATCCTCGTGTTTTTCGTACGTCTCCTGCAATTGCTTAGTGGGAGAAACATCTTGCAAG
CCAAGGCATAGTGAGAATGTCTGATCAAATAGCCAAAGGTCAGGAGTTCGAGAAGAAAGCTGAGAAGAAGCTCAATGGTTGGGGATTCTTTGGATCCAAG
TATGAAGATGCTGGTGATTTATATGAAAAAGCTGC
dot-bracket secondary structure
..(((...(((..(((...((((((.((((.((((...(((.((((..((.(((((((.((.((((((((.........)))))))).(((((((((..(
(....))...))))).))))((((((...........))))))..)).)))))))...))...((((((.(((((...)))))..))))))))))..)))
.)))).)))).)))))).)))...)))..)))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P93798|SNAA_VITVI: 0.00000000003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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