miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST002906
species: Carthamus tinctorius
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCATCATCATCATCTCTC

miRNA*
 GGGCTGTTGGTGGTGGTGGAG

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TCTCAATATCATCATCATCATCATCATCTCTCATCTCACGGTTTGATTTACGTATCGGGGGGATCTTCCGAATCTGCCTGCCAATCTAATCCCTAATTAC
AGGGAAGATTGAATCTTGGGAATCTTTCCTCGATCTTCCTTTTTTATCATTTCTATGCTGGCAGGTTCTCTAGATTCTCCACCCAAAATCTTGCTTACAA
ATATCATAGGAGAACGTAAACCAAGATTCTGTTGATAACTGGGCGTTGATTTAGATACCCATTTGTCAATTTGTTGTTTCTTTGATGGGTTATATTCTAG
AGTCTAATCAGGGGGCTGTTGGTGGTGGTGGAGGGAAATTG

dot-bracket secondary structure
...((((.((.((((((((((((.((.(((((...(((.((...(((..(((.((..(((((((((...(((((((((.((......(((...(((....
((((((((((((......((((...))))))))))))))))..)))..))).....)).)))))))))...)))))))))...((.(((((((.((((..
...((....))....))))..))))))).)).((((((.((((.(((......))).)))).)))))))).))).))).)).)))..(((((.((.....
.)).))))).))))).)).))))))))))))...)).))))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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