ABOUT THIS RECORDspecies: Carthamus tinctorius
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCATCC miRNA* ATGAATATGATGATGTTGCAAC mismatches: 5 bulges: 1 |
pre-miRNA
ACATCCCTTTCGAATGAATATGATGATGTTGCAACTTCTCCTCTAGTCTTCATTCGTTTATCAGCTTTCTCCAATTCCAAGCATGGCCAGTTCGTTGTGG
ATGCCGCAATTAAGATTTGCTTCTCCACAAGTGGAACCTAAGTTTTGCCGGAGTCATGTACGATTATATGGTGTTCATCATCATCATCATCATCCTCAAT
CGTCT
dot-bracket secondary structure
...........((((((..(((((((((.((.(((....((............((((....((.....((((........(((.(((..((((.((((((
(....((((.......))))...)))))))...))))....))).))).))))...)).))))......)).))))).)))))))))..))))..))...
.....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACATCCCTTTCGAATGAATATGATGATGTTGCAACTTCTCCTCTAGTCTTCATTCGTTTATCAGCTTTCTCCAATTCCAAGCATGGCCAGTTCGTTGTGG
ATGCCGCAATTAAGATTTGCTTCTCCACAAGTGGAACCTAAGTTTTGCCGGAGTCATGTACGATTATATGGTGTTCATCATCATCATCATCATCCTCAAT
CGTCT
dot-bracket secondary structure
...........((((((..(((((((((.((.(((....((............((((....((.....((((........(((.(((..((((.((((((
(....((((.......))))...)))))))...))))....))).))).))))...)).))))......)).))))).)))))))))..))))..))...
.....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
