ABOUT THIS RECORDspecies: Cenchrus ciliaris
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Cenchrus ciliaris Cenchrus Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCTCTAAATA miRNA* CGTAGGGACGGAGGGTAAGTATT mismatches: 4 bulges: 2 |
pre-miRNA
GTACACCGAACCTACTCCCTCCGTCTCTAAATAAGTGTCGTTCGTAGGGACGGAGGGTAAGTATTTTTATCTG
dot-bracket secondary structure
)...........(((((((((((((((((...............)))))))))))))..))))..........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTACACCGAACCTACTCCCTCCGTCTCTAAATAAGTGTCGTTCGTAGGGACGGAGGGTAAGTATTTTTATCTG
dot-bracket secondary structure
)...........(((((((((((((((((...............)))))))))))))..))))..........
SIMILARITIES| miRBase no hits PMRD hpr-miR1120: 0.0008 microPC miR1439: 0.0008 | UniProt no hits RFAM 2MIR1122: 6.0E-5 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
