ABOUT THIS RECORDspecies: Cenchrus ciliaris
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Cenchrus ciliaris Cenchrus Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCCCTCCGTTCCAAATT miRNA* TTTGGAACGGAGGTAGTACAA mismatches: 2 bulges: 0 |
pre-miRNA
AATAGTAAATGATACTCCCTCCGTTCCAAATTATAGGTCGTTTTAATTTTTCTAGATTCATGAACATTATTATGTATCTAGACATAGTATATATCCAAAT
ACATAACATCATCTATGAATCTTATAAGCCAAAACGACCTATAATTTGGAACGGAGGTAGTACAAGGGAACTC
dot-bracket secondary structure
............((((.(((((((((((((((((((((((((((..(((....(((((((((.......((((((((...((.(((...))).))...))
)))))).......)))))))))...)))..))))))))))))))))))))))))))).))))..((....)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATAGTAAATGATACTCCCTCCGTTCCAAATTATAGGTCGTTTTAATTTTTCTAGATTCATGAACATTATTATGTATCTAGACATAGTATATATCCAAAT
ACATAACATCATCTATGAATCTTATAAGCCAAAACGACCTATAATTTGGAACGGAGGTAGTACAAGGGAACTC
dot-bracket secondary structure
............((((.(((((((((((((((((((((((((((..(((....(((((((((.......((((((((...((.(((...))).))...))
)))))).......)))))))))...)))..))))))))))))))))))))))))))).))))..((....)).
SIMILARITIES| miRBase no hits PMRD osa-miRf11780-akr: 0.0005 microPC miR1439: 0.000009 | UniProt no hits RFAM MIR1122: 0.00000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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