ABOUT THIS RECORDspecies: Cenchrus ciliaris
miRNA family: MIRf1372
source: miRNEST
Taxonomy by NCBI:
Cenchrus ciliaris Cenchrus Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGAGCTTCTCGAAGATGTCG miRNA* TTGTAGCGGGCGAGCTTGGCG mismatches: 4 bulges: 2 |
pre-miRNA
GTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAG
dot-bracket secondary structure
...(((.((((.......((((.(((((((.((((...)))).))))))))))))))).)))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
GTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAG
dot-bracket secondary structure
...(((.((((.......((((.(((((((.((((...)))).))))))))))))))).)))..........
SIMILARITIES| miRBase no hits PMRD osa-miRf10132-akr: 2e-29 microPC no hits | UniProt sp|Q6ZBP3|H2B2_ORYSJ: 0.000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
