miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST002930
species: Centaurea maculosa
miRNA family: MIRf144
source: miRNEST

Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GATGGCGTATGAGGAGCCAAG

miRNA*
 TGGCTCCCTGTATGCCATTTT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 GTAAGTATATGCCTGGCTCCCTGTATGCCATTTTCAGAGCCCATCGGTATTTCCAATGGCCTCCGTGGATGGCGTATGAGGAGCCAAGCATATTCCAC

dot-bracket secondary structure
......((((((.(((((((.((((((((((((...(((.((((.((.....)).)))).)))...)))))))))))).))))))).)))))).....


SIMILARITIES
miRBase ptc-MIR160c: 1e-24

PMRD ptc-miR160c: 1e-24

microPC miR160: 1e-40		UniProt no hits

RFAM mir-160: 1e-19		most similar mature miRNAs

Identical with: miR160 from microPC (MNEST046058)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;