ABOUT THIS RECORDspecies: Centaurea maculosa
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCTCGTCATCATCATCATCA miRNA* ATGAAGATGGGAAATGGATA mismatches: 4 bulges: 1 |
pre-miRNA
ATTTCGTGTTTGATGAAGATGGGAAATGGATATTGCAGGGATGGAAGGGAAGGATACTGTATGCTAGTTCATGTTGGGTCCCTGCATAGTCCTCGTCATC
ATCATCATCATCATCGCCA
dot-bracket secondary structure
.....(((..((((((.(((((((...((((..((((((((((((..((.((....)).....))..)))).......))))))))..))))...)).))
))).)))))).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTTCGTGTTTGATGAAGATGGGAAATGGATATTGCAGGGATGGAAGGGAAGGATACTGTATGCTAGTTCATGTTGGGTCCCTGCATAGTCCTCGTCATC
ATCATCATCATCATCGCCA
dot-bracket secondary structure
.....(((..((((((.(((((((...((((..((((((((((((..((.((....)).....))..)))).......))))))))..))))...)).))
))).)))))).))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P0C884|SCL34_ARATH: 0.00000002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
