ABOUT THIS RECORDspecies: Cichorium endivia
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGATGCAGCGGTTCATCGATC mismatches: 2 bulges: 0 |
pre-miRNA
CAAAGGGTCACTGGATGCAGCGGTTCATCGATCTGTTCCCTAAGCCTGATGAATGAATTAAAAAATAATAAGGAAAAAAATCGAAGGCAACAGATACAAA
GAGAAGTGAGAGGCAAAAGGAATCGGTCGATAAACCTCTGCATCCAGCGTTCACCC
dot-bracket secondary structure
....((((..((((((((((.((((.(((((((.(((((....((((.....................................................
..........))))....))))).))))))).)))).)))))))))).....))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAAAGGGTCACTGGATGCAGCGGTTCATCGATCTGTTCCCTAAGCCTGATGAATGAATTAAAAAATAATAAGGAAAAAAATCGAAGGCAACAGATACAAA
GAGAAGTGAGAGGCAAAAGGAATCGGTCGATAAACCTCTGCATCCAGCGTTCACCC
dot-bracket secondary structure
....((((..((((((((((.((((.(((((((.(((((....((((.....................................................
..........))))....))))).))))))).)))).)))))))))).....))))
SIMILARITIES| miRBase vvi-MIR162: 0.0000000000005 PMRD vvi-miR162: 0.0000000000005 microPC miR162: 4e-60 | UniProt no hits RFAM MIR162_2: 0.000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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