ABOUT THIS RECORDspecies: Cichorium endivia
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGATGCAGCGGTTCATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 2 bulges: 0 |
pre-miRNA
CTTAGAGGGTCACTGGATGCAGCGGTTCATCGATCTGTTCCCTAAGCCTGATGAATGAATGAAAAAATAATAAGGAAAAAAACGAAGGTAGGAGATAGAGA
GAGAAGTGAGAGGCACAAGGAATCGGTCGATAAACCTCTGCATCCAGCGTTCACCCC
dot-bracket secondary structure
).....((((..((((((((((.((((.(((((((.(((((....((((....................................................
..........))))....))))).))))))).)))).)))))))))).....)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTAGAGGGTCACTGGATGCAGCGGTTCATCGATCTGTTCCCTAAGCCTGATGAATGAATGAAAAAATAATAAGGAAAAAAACGAAGGTAGGAGATAGAGA
GAGAAGTGAGAGGCACAAGGAATCGGTCGATAAACCTCTGCATCCAGCGTTCACCCC
dot-bracket secondary structure
).....((((..((((((((((.((((.(((((((.(((((....((((....................................................
..........))))....))))).))))))).)))).)))))))))).....)))).
SIMILARITIES| miRBase vvi-MIR162: 5.0E-13 PMRD vvi-miR162: 5.0E-13 microPC miR162: 1.0E-60 | UniProt no hits RFAM 2MIR162_2: 2.0E-9 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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