ABOUT THIS RECORDspecies: Cichorium endivia
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTCCAATTCCGCCCATGC miRNA* ATGGTCGGTTTGGAAAGAAT mismatches: 3 bulges: 1 |
pre-miRNA
TAAGGAGAGGAGGGAAAGGATGATCTGCAAGTAATGTGTGGAATGGTCGGTTTGGAAAGAATGAATTCGTTTCCTGATGAAGGGAATAATAGTTTTCTTT
CCAATTCCGCCCATGCCGCTTATTACTTGTGGTTTCTTCCCTTTCCCTTGACCTT
dot-bracket secondary structure
.((((....((((((((((..((.((((((((((((.((((.((((.(((.((((((((((.......(((((((.....))))))).......))))))
))))..))).)))).)))).))))))))))))..))...))))))))))..))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAAGGAGAGGAGGGAAAGGATGATCTGCAAGTAATGTGTGGAATGGTCGGTTTGGAAAGAATGAATTCGTTTCCTGATGAAGGGAATAATAGTTTTCTTT
CCAATTCCGCCCATGCCGCTTATTACTTGTGGTTTCTTCCCTTTCCCTTGACCTT
dot-bracket secondary structure
.((((....((((((((((..((.((((((((((((.((((.((((.(((.((((((((((.......(((((((.....))))))).......))))))
))))..))).)))).)))).))))))))))))..))...))))))))))..))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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