ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGATACATCCATATTTGGAC miRNA* CGAAATATTACATGTATCTATA mismatches: 3 bulges: 1 |
pre-miRNA
CTAAATTGTCGTCGAAATATTACATGTATCTATACACTTTTAAAAAATAGATACATCCATATTTGGACAAATTTGAA
dot-bracket secondary structure
.((((((...(((.((((((...((((((((((.............))))))))))..)))))).))).))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTAAATTGTCGTCGAAATATTACATGTATCTATACACTTTTAAAAAATAGATACATCCATATTTGGACAAATTTGAA
dot-bracket secondary structure
.((((((...(((.((((((...((((((((((.............))))))))))..)))))).))).))))))..
SIMILARITIES| miRBase bdi-MIR5183: 3e-16 PMRD bdi-miR1135: 0.000000000000004 microPC no hits | UniProt no hits RFAM MIR1122: 8e-20 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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