ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTACTCCCTCCGATCCTAAA miRNA* TATGATCAGAGGGAGTAGATC mismatches: 4 bulges: 0 |
pre-miRNA
CGAGAGTAGAATAGTACTCCCTCCGATCCTAAATTGTTGTCAAAATATTACGCGTATCTAAACACTTTTTAATAATAGATACATTCATATTTGGACAAATT
TGAGTCAAGAATTTATGATCAGAGGGAGTAGATCACTAGGTC
dot-bracket secondary structure
).............(((((((((.((((.((((((.(((((.((((((.....(((((((...............)))))))....)))))).))))).((
((...)))))))))).)))).)))))))))((((....))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGAGAGTAGAATAGTACTCCCTCCGATCCTAAATTGTTGTCAAAATATTACGCGTATCTAAACACTTTTTAATAATAGATACATTCATATTTGGACAAATT
TGAGTCAAGAATTTATGATCAGAGGGAGTAGATCACTAGGTC
dot-bracket secondary structure
).............(((((((((.((((.((((((.(((((.((((((.....(((((((...............)))))))....)))))).))))).((
((...)))))))))).)))).)))))))))((((....))))
SIMILARITIES| miRBase bdi-MIR5183: 3.0E-17 PMRD bdi-miR1122: 7.0E-6 microPC no hits | UniProt no hits RFAM 2MIR1122: 1.0E-35 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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