ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTACTCCCTCCGTCCCATATT miRNA* TATGAGATGGAGGGAGTATAT mismatches: 2 bulges: 0 |
pre-miRNA
AAAGTAAGAAACTACTCCCTCCGTCCCATATTAAGTGTCAAAATATTACATGTATCTAGACGTTTTTTAGGTATAGATACATCCATCTTTGGACAAATTT
GAGACACTTAATATGAGATGGAGGGAGTATATGTCTACAG
dot-bracket secondary structure
...(((.((...(((((((((((((.(((((((((((((.((((......((((((((.((.........)).))))))))((((....))))...))))
..))))))))))))).)))))))))))))....)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAGTAAGAAACTACTCCCTCCGTCCCATATTAAGTGTCAAAATATTACATGTATCTAGACGTTTTTTAGGTATAGATACATCCATCTTTGGACAAATTT
GAGACACTTAATATGAGATGGAGGGAGTATATGTCTACAG
dot-bracket secondary structure
...(((.((...(((((((((((((.(((((((((((((.((((......((((((((.((.........)).))))))))((((....))))...))))
..))))))))))))).)))))))))))))....)))))..
SIMILARITIES| miRBase bdi-MIR1127: 0.0000000000001 PMRD bdi-miR1127: 0.0000000000001 microPC miR1135: 0.0001 | UniProt no hits RFAM MIR1122: 2e-40 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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