ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCCCTCCGTTCCATAAT miRNA* TATGAAACGGAGGTAGTACAT mismatches: 3 bulges: 0 |
pre-miRNA
GTTAAACTAATACTCCCTCCGTTCCATAATTCAATATTACATGTATCTAGACGTTTGAAAAAAATAGATACATTCATTTTTGGGCAAATTTGGGACAAGA
ATTATGAAACGGAGGTAGTACATATGTAC
dot-bracket secondary structure
..........((((.((((((((.((((((((....((..(((((((((....(((....))).)))))))))(((..(((....)))..)))))...))
)))))).)))))))).)))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTAAACTAATACTCCCTCCGTTCCATAATTCAATATTACATGTATCTAGACGTTTGAAAAAAATAGATACATTCATTTTTGGGCAAATTTGGGACAAGA
ATTATGAAACGGAGGTAGTACATATGTAC
dot-bracket secondary structure
..........((((.((((((((.((((((((....((..(((((((((....(((....))).)))))))))(((..(((....)))..)))))...))
)))))).)))))))).)))).........
SIMILARITIES| miRBase osa-MIR818d: 0.0004 PMRD osa-miR818d: 0.0004 microPC no hits | UniProt no hits RFAM MIR1122: 0.00000000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
