ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGATTTGCCTG miRNA* GGCAAGTCAGCCTGGCTACC mismatches: 1 bulges: 1 |
pre-miRNA
GCCATCTTTGATAGCCAAGGATGATTTGCCTGTAAAACCGATTGTCGTCGCCTCTCGGTGCCGTTCCAGGCACTCGAAGGGAGGGCGGCAGCAACAGGTT
CTATGGGCAAGTCAGCCTGGCTACCCGAGTACC
dot-bracket secondary structure
...........((((((.((.(((((((((((((.((((..((((.((((((((((((((((......))))))....)))).)))))).))))..))))
.))))))))))))).))))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCATCTTTGATAGCCAAGGATGATTTGCCTGTAAAACCGATTGTCGTCGCCTCTCGGTGCCGTTCCAGGCACTCGAAGGGAGGGCGGCAGCAACAGGTT
CTATGGGCAAGTCAGCCTGGCTACCCGAGTACC
dot-bracket secondary structure
...........((((((.((.(((((((((((((.((((..((((.((((((((((((((((......))))))....)))).)))))).))))..))))
.))))))))))))).))))))))..........
SIMILARITIES| miRBase bdi-MIR169k: 1e-71 PMRD osa-miR1433: 0.0000000004 microPC miR169: 0.000006 | UniProt no hits RFAM MIR169_5: 0.00000000003 | most similar mature miRNAs |
Identical with: bdi-MIR169k from miRBase (MNEST041763) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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