ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR2504
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACCAAGTTTATAGAAAAA miRNA* TTTCTAAAAACTTGGTCAGAC mismatches: 1 bulges: 0 |
pre-miRNA
TACTCTTGTCATAAGTCAAACTTCTTCATGTTTGACCAAGTTTATAGAAAAATCTACTAAGAATATCAAATGAGCGTGCTATGAAAATATATATAATAAC
AAATTTAATAAAACTAATTTGGACTTGTAGATTTTTCTAAAAACTTGGTCAGACTTGAAGAAGTTTGACTT
dot-bracket secondary structure
............((((((((((((((((.((((((((((((((.(((((((((((((.(((....((((((....((..(((.(((..............
...))).)))..))..)))))).)))))))))))))))).)))))))))))))).))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACTCTTGTCATAAGTCAAACTTCTTCATGTTTGACCAAGTTTATAGAAAAATCTACTAAGAATATCAAATGAGCGTGCTATGAAAATATATATAATAAC
AAATTTAATAAAACTAATTTGGACTTGTAGATTTTTCTAAAAACTTGGTCAGACTTGAAGAAGTTTGACTT
dot-bracket secondary structure
............((((((((((((((((.((((((((((((((.(((((((((((((.(((....((((((....((..(((.(((..............
...))).)))..))..)))))).)))))))))))))))).)))))))))))))).))))))))))))))))
SIMILARITIES| miRBase osa-MIR437: 0.0000000006 PMRD bdi-miR2504b: 8e-40 microPC miR437: 0.0001 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
