ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTCCTCTTTCTGTCAGC mismatches: 2 bulges: 2 |
pre-miRNA
CCTCGAGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGTCCGGCATATGTATGCCGTCGTCGCCGCGTGCTCACTCCTCTTTCTGTCAGCCTCTTT
CT
dot-bracket secondary structure
....(((((.((((((((((.((((((((((.((((..((((..((((((....)))))).)))))))).))))))))))...)))))))))).))))).
..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCTCGAGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGTCCGGCATATGTATGCCGTCGTCGCCGCGTGCTCACTCCTCTTTCTGTCAGCCTCTTT
CT
dot-bracket secondary structure
....(((((.((((((((((.((((((((((.((((..((((..((((((....)))))).)))))))).))))))))))...)))))))))).))))).
..
SIMILARITIES| miRBase bdi-MIR156c: 4e-53 PMRD osa-miR156d: 4e-31 microPC miR156: 2e-17 | UniProt no hits RFAM mir-156: 7e-24 | most similar mature miRNAs |
Identical with: bdi-MIR156c from miRBase (MNEST041728) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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