ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR2506
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGACCAACAATTCGACTAA miRNA* GGTCTAATCGTTGGTCAAAGT mismatches: 2 bulges: 0 |
pre-miRNA
GCACGCATTTCAAGATTTTACTTTGACCAACAATTCGACTAATGATTTGAGGTTTATGTGTTACAAAAATTATATCATTGGATTCGTATTTCAAAAACCT
TTCCAACGATATAAATTTCTAACATATAATCTACATACAATTGGTCTAATCGTTGGTCAAAGTTCGACCTCGAAAAGGAGT
dot-bracket secondary structure
.......((((.((.((..((((((((((((.(((.(((((((....((.((.((((((((((.(((..(((((((.(((((...((.((...)).))..
.))))).))))))).))).)))))))))).)).))....))))))).))).))))))))))))..)).)).))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCACGCATTTCAAGATTTTACTTTGACCAACAATTCGACTAATGATTTGAGGTTTATGTGTTACAAAAATTATATCATTGGATTCGTATTTCAAAAACCT
TTCCAACGATATAAATTTCTAACATATAATCTACATACAATTGGTCTAATCGTTGGTCAAAGTTCGACCTCGAAAAGGAGT
dot-bracket secondary structure
.......((((.((.((..((((((((((((.(((.(((((((....((.((.((((((((((.(((..(((((((.(((((...((.((...)).))..
.))))).))))))).))).)))))))))).)).))....))))))).))).))))))))))))..)).)).))))......
SIMILARITIES| miRBase no hits PMRD bdi-miR2507a: 3e-55 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
