ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf137
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCTGATGATGCTGCAGCGGA miRNA* CGTGGTGGCAGTTTTGGAGA mismatches: 5 bulges: 1 |
pre-miRNA
GGCAGCTGTCGTGGTGGCAGTTTTGGAGAATCCTGATGATGCTGCAGCGGACGATGA
dot-bracket secondary structure
..((....((((.((((((..((.(((...))).))...)))))).))))....)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGCAGCTGTCGTGGTGGCAGTTTTGGAGAATCCTGATGATGCTGCAGCGGACGATGA
dot-bracket secondary structure
..((....((((.((((((..((.(((...))).))...)))))).))))....)).
SIMILARITIES| miRBase bdi-MIR172d: 3e-21 PMRD bdi-miR172d: 3e-21 microPC miR172: 0.00004 | UniProt no hits RFAM mir-172: 0.00004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
