ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTACTCCCTCCGTCCCATATT miRNA* TATGGGACGGAGGGAGTACAA mismatches: 1 bulges: 0 |
pre-miRNA
TGCTCCCTCCGTTTGTAAATAGTACTCCCTCCGTCCCATATTTAAGTGACTCAAATTTGCCCAAATATGGATGTATCTATTCCCAAAAAGCGTCTAATAC
ATGTATGGGACGGAGGGAGTACAACATTTATGTTTGTCTTAA
dot-bracket secondary structure
.........((..(((((((.((((((((((((((((((((......(((.....(((........(((((....)))))......)))..)))......
..))))))))))))))))))))...)))))))..))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCTCCCTCCGTTTGTAAATAGTACTCCCTCCGTCCCATATTTAAGTGACTCAAATTTGCCCAAATATGGATGTATCTATTCCCAAAAAGCGTCTAATAC
ATGTATGGGACGGAGGGAGTACAACATTTATGTTTGTCTTAA
dot-bracket secondary structure
.........((..(((((((.((((((((((((((((((((......(((.....(((........(((((....)))))......)))..)))......
..))))))))))))))))))))...)))))))..))......
SIMILARITIES| miRBase bdi-MIR437: 0.0000000005 PMRD bdi-miR437: 0.0000000005 microPC no hits | UniProt no hits RFAM MIR1122: 6e-22 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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