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ABOUT THIS RECORD
ID:
MNEST003073
species:
Brachypodium distachyon
miRNA family:
MIR444
source:
miRNEST
Taxonomy by NCBI:
Brachypodium distachyon
Brachypodium
Brachypodieae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCAGTTGTTGTCTCAAGCTT
miRNA*
ACTTGAGGCAGCAACTGCATA
mismatches:
1
bulges:
0
View larger
pre-miRNA
ATTGATGCAAGGGGTGGTGACAA
ACTTGAGGCAGCAACTGCATA
TCTTGCAAGAAAATTGGGTTTCAGAGCATACCGATGATTTTCTTGCAAGTTG
TGCA
GTTGTTGTCTCAAGCTT
GCTGCCTCCCTTTGCCAAAA
dot-bracket secondary structure
......((((((((.((((.(((
.((((((((((((((((((((
.((((((((((((((((((..........)))..))))))))))))))).))
))))
)))))))))))))).))
).)))).)))))))).....
SIMILARITIES
miRBase
osa-MIR444b
:
4e-41
PMRD
pvi-miR444
:
3e-51
microPC
miR444
:
4e-38
UniProt
sp|Q6EP49|MAD27_ORYSJ: 0.00001
RFAM
MIR444: 8e-46
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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