ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGTTGTCTCAAGCTT miRNA* ACTTGAGGCAGCAACTGCATA mismatches: 1 bulges: 0 |
pre-miRNA
ATTGATGCAAGGGGTGGTGACAAACTTGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGGTTTCAGAGCATACCGATGATTTTCTTGCAAGTTGTGCA
GTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAA
dot-bracket secondary structure
......((((((((.((((.(((.((((((((((((((((((((.((((((((((((((((((..........)))..))))))))))))))).))))))
)))))))))))))).))).)))).)))))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTGATGCAAGGGGTGGTGACAAACTTGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGGTTTCAGAGCATACCGATGATTTTCTTGCAAGTTGTGCA
GTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAA
dot-bracket secondary structure
......((((((((.((((.(((.((((((((((((((((((((.((((((((((((((((((..........)))..))))))))))))))).))))))
)))))))))))))).))).)))).)))))))).....
SIMILARITIES| miRBase osa-MIR444b: 4e-41 PMRD pvi-miR444: 3e-51 microPC miR444: 4e-38 | UniProt sp|Q6EP49|MAD27_ORYSJ: 0.00001 RFAM MIR444: 8e-46 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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