ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCCCATAAAT miRNA* TTATGGAACGGAGGGACTACC mismatches: 3 bulges: 0 |
pre-miRNA
CACTCTGCATTACTCCCTCCGTCCCATAAATATTGGCACGGTTTTAAACTAGAGCTAGTTCAAAACCACGCCAATCTTTATGGAACGGAGGGACTACCTT
TTTTT
dot-bracket secondary structure
..........((.(((((((((.(((((((.((((((..((((((.(((((....))))).))))))..)))))).))))))).))))))))).))....
.....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CACTCTGCATTACTCCCTCCGTCCCATAAATATTGGCACGGTTTTAAACTAGAGCTAGTTCAAAACCACGCCAATCTTTATGGAACGGAGGGACTACCTT
TTTTT
dot-bracket secondary structure
..........((.(((((((((.(((((((.((((((..((((((.(((((....))))).))))))..)))))).))))))).))))))))).))....
.....
SIMILARITIES| miRBase bdi-MIR5174: 6e-21 PMRD osa-miRf10842-akr: 0.00008 microPC no hits | UniProt no hits RFAM MIR1122: 1e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
