ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR393
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATTGCACTGTTC miRNA* AATCAATGCGATCCCTTTGGAGT mismatches: 1 bulges: 2 |
pre-miRNA
GAATCCAAAATTCCAAAGGGATTGCACTGTTCTTGCATATGCCTCGATCCCTCCCTCCGTTGATTCATGCTTGGATGCCGCTGAAGAAATCAATGCGATC
CCTTTGGAGTCCTCCCCT
dot-bracket secondary structure
.........(((((((((((((((((.(((((((((((..((.(((((..........))))).....))....)))).....)))))..)).)))))))
))))))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAATCCAAAATTCCAAAGGGATTGCACTGTTCTTGCATATGCCTCGATCCCTCCCTCCGTTGATTCATGCTTGGATGCCGCTGAAGAAATCAATGCGATC
CCTTTGGAGTCCTCCCCT
dot-bracket secondary structure
.........(((((((((((((((((.(((((((((((..((.(((((..........))))).....))....)))).....)))))..)).)))))))
))))))))))........
SIMILARITIES| miRBase bdi-MIR393b: 2e-39 PMRD zma-miR393: 0.00000002 microPC miR393: 0.0004 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
