ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR1127
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTTACTCCCTCCGTTCCATA miRNA* TGGAACGGAGGGAGTAGCTGT mismatches: 3 bulges: 0 |
pre-miRNA
CTCCGATCCCTACTTACTCCCTCCGTTCCATAAAAGATCGGCACGAATTTGAACTAGAGCTAATTCAAATCCGTGCCAATCTTTATGGAACGGAGGGAGT
AGCTGTTAATTGGC
dot-bracket secondary structure
..(((((...((.(((((((((((((((((((((.(((.((((((.(((((((.((....)).))))))).)))))).))))))))))))))))))))))
)).))...))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCCGATCCCTACTTACTCCCTCCGTTCCATAAAAGATCGGCACGAATTTGAACTAGAGCTAATTCAAATCCGTGCCAATCTTTATGGAACGGAGGGAGT
AGCTGTTAATTGGC
dot-bracket secondary structure
..(((((...((.(((((((((((((((((((((.(((.((((((.(((((((.((....)).))))))).)))))).))))))))))))))))))))))
)).))...))))).
SIMILARITIES| miRBase bdi-MIR5174: 2e-21 PMRD no hits microPC no hits | UniProt no hits RFAM MIR1122: 0.00000000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
