ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf1532
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGGTGCAGTGGCAGATGCA miRNA* CATTTGCACCTGCACCTACAT mismatches: 3 bulges: 0 |
pre-miRNA
AAGAATGGTGTGATTTTTGCTGCATTTGCACCTGCACCTACATCGAAGGAACGATAGAAGCACTGCACCTATTTCATCAATTATCGTCATGCAGGCTTCT
TGATCCTCCTCCTAAGCTGCTTAGGTGCAGTGGCAGATGCAGGTGTATCACAGGAATTTT
dot-bracket secondary structure
..((((..((((((...((((((((((((..(((((((((......((((..(((((((((.(((((......................)))))))))))
..)))....))))........)))))))))..))))))))).))).))))))...)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AAGAATGGTGTGATTTTTGCTGCATTTGCACCTGCACCTACATCGAAGGAACGATAGAAGCACTGCACCTATTTCATCAATTATCGTCATGCAGGCTTCT
TGATCCTCCTCCTAAGCTGCTTAGGTGCAGTGGCAGATGCAGGTGTATCACAGGAATTTT
dot-bracket secondary structure
..((((..((((((...((((((((((((..(((((((((......((((..(((((((((.(((((......................)))))))))))
..)))....))))........)))))))))..))))))))).))).))))))...)))).
SIMILARITIES| miRBase osa-MIR530: 0.000002 PMRD osa-miRf10677-akr: 0.000002 microPC miR530: 0.000002 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
