ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR530
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCACCTAC miRNA* AGGTGCAGTGGCAGATGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
GAAGAATGGTGTGATTTTTGCTGCATTTGCACCTGCACCTACATCGAAGGAACGATAGAAGCACTGCACCTATTTCATCAATTATCGTCATGCAGGCTTC
TTGATCCTCCTCCTAAGCTGCTTAGGTGCAGTGGCAGATGCAGGTGTATCACAGGAATTTTC
dot-bracket secondary structure
...((((..((((((...((((((((((((..(((((((((......((((..(((((((((.(((((......................))))))))))
)..)))....))))........)))))))))..))))))))).))).))))))...))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAAGAATGGTGTGATTTTTGCTGCATTTGCACCTGCACCTACATCGAAGGAACGATAGAAGCACTGCACCTATTTCATCAATTATCGTCATGCAGGCTTC
TTGATCCTCCTCCTAAGCTGCTTAGGTGCAGTGGCAGATGCAGGTGTATCACAGGAATTTTC
dot-bracket secondary structure
...((((..((((((...((((((((((((..(((((((((......((((..(((((((((.(((((......................))))))))))
)..)))....))))........)))))))))..))))))))).))).))))))...))))..
SIMILARITIES| miRBase osa-MIR530: 0.000002 PMRD osa-miRf10677-akr: 0.000002 microPC miR530: 0.000002 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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