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ABOUT THIS RECORD
ID:
MNEST003083
species:
Brachypodium distachyon
miRNA family:
MIR393
source:
miRNEST
Taxonomy by NCBI:
Brachypodium distachyon
Brachypodium
Brachypodieae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGATC
miRNA*
TCAGTGCAATCCCTTTGGAAT
mismatches:
1
bulges:
0
View larger
pre-miRNA
GCTAGTGGAGGAC
TCCAAAGGGATCGCATTGATC
TCATCAGCTGCATCCAAGCATGAATCAACGGATGGATGGATCGATGCATATGCAAGA
TCAGTGCAA
TCCCTTTGGAAT
TCTCGACTCG
dot-bracket secondary structure
...(((.(((((.
(((((((((((.(((((((((
(...((..((((((....(((..(((....)))..)))....))))))..))..)))
))))))).)
)))))))))).)
)))).)))..
SIMILARITIES
miRBase
bdi-MIR393b
:
5e-65
PMRD
osa-miR393b
:
0.000000000002
microPC
miR393
:
0.00002
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record
deep sequencing data evidence