ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR393
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATC miRNA* TCAGTGCAATCCCTTTGGAAT mismatches: 1 bulges: 0 |
pre-miRNA
GCTAGTGGAGGACTCCAAAGGGATCGCATTGATCTCATCAGCTGCATCCAAGCATGAATCAACGGATGGATGGATCGATGCATATGCAAGATCAGTGCAA
TCCCTTTGGAATTCTCGACTCG
dot-bracket secondary structure
...(((.(((((.(((((((((((.((((((((((...((..((((((....(((..(((....)))..)))....))))))..))..)))))))))).)
)))))))))).))))).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GCTAGTGGAGGACTCCAAAGGGATCGCATTGATCTCATCAGCTGCATCCAAGCATGAATCAACGGATGGATGGATCGATGCATATGCAAGATCAGTGCAA
TCCCTTTGGAATTCTCGACTCG
dot-bracket secondary structure
...(((.(((((.(((((((((((.((((((((((...((..((((((....(((..(((....)))..)))....))))))..))..)))))))))).)
)))))))))).))))).)))..
SIMILARITIES| miRBase bdi-MIR393b: 5e-65 PMRD osa-miR393b: 0.000000000002 microPC miR393: 0.00002 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
