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ABOUT THIS RECORD
ID:
MNEST003091
species:
Brachypodium distachyon
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Brachypodium distachyon
Brachypodium
Brachypodieae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATACTCCCTCTGTCCCATATT
miRNA*
TATGGGACGGAGGGAGTAGAT
mismatches:
1
bulges:
0
View larger
pre-miRNA
TATGTAGTATT
ATACTCCCTCTGTCCCATATT
AAGTGACTCAAATTTATCTAAATATAAACGTATGTGTATAGTAAAACACGTCTAGATAAATGTAATAG
AAAGTTAA
TATGGGACGGAGGGAGTAGAT
CCCAAAAC
dot-bracket secondary structure
...........
.((((((((((((((((((((
((.........(((((((((.((((....))))((((........))))...))))))))).......
....))))
))))))))))))))))))...
........
SIMILARITIES
miRBase
bdi-MIR5171
:
0.0001
PMRD
hpr-miR1120
:
0.00003
microPC
no hits
UniProt
no hits
RFAM
MIR1122: 2e-25
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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