ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGGGACGGAGGGAGTAGAT miRNA* ATACTCCCTCTGTCCCATATT mismatches: 3 bulges: 0 |
pre-miRNA
ATGTAGTATTATACTCCCTCTGTCCCATATTAAGTGACTCAAATTTATCTAAATATAAACGTATGTGTATAGTAAAACACGTCTAGATAAATGTAATAGA
AAGTTAATATGGGACGGAGGGAGTAGATCCCAAAA
dot-bracket secondary structure
...........((((((((((((((((((((((.........(((((((((.((((....))))((((........))))...)))))))))........
...))))))))))))))))))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGTAGTATTATACTCCCTCTGTCCCATATTAAGTGACTCAAATTTATCTAAATATAAACGTATGTGTATAGTAAAACACGTCTAGATAAATGTAATAGA
AAGTTAATATGGGACGGAGGGAGTAGATCCCAAAA
dot-bracket secondary structure
...........((((((((((((((((((((((.........(((((((((.((((....))))((((........))))...)))))))))........
...))))))))))))))))))))))..........
SIMILARITIES| miRBase bdi-MIR5171: 0.0001 PMRD hpr-miR1120: 0.00003 microPC no hits | UniProt no hits RFAM MIR1122: 2e-25 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
