ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTACTCCCTCCGTTCCATAAT miRNA* TATGAAACGAAGGGAGTATTT mismatches: 3 bulges: 0 |
pre-miRNA
ATCTTTATACATGATATTTATTTCATATCTACTACTCCCTCCGTTCCATAATTCTTGTCTCAAATTTGCCCAAAAATGAATGTATCTATTTCTAAAAAAT
GTCTAAATACATGTAATATTTCGACAAGAATGAATTATGAAACGAAGGGAGTATTTCTCTCCAAA
dot-bracket secondary structure
............(((((.......)))))...((((((((.((((.(((((((((((((......((((..........((((((.(((((.....))))
).....))))))))))......)))))))....)))))).)))).))))))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATCTTTATACATGATATTTATTTCATATCTACTACTCCCTCCGTTCCATAATTCTTGTCTCAAATTTGCCCAAAAATGAATGTATCTATTTCTAAAAAAT
GTCTAAATACATGTAATATTTCGACAAGAATGAATTATGAAACGAAGGGAGTATTTCTCTCCAAA
dot-bracket secondary structure
............(((((.......)))))...((((((((.((((.(((((((((((((......((((..........((((((.(((((.....))))
).....))))))))))......)))))))....)))))).)))).))))))))............
SIMILARITIES| miRBase bdi-MIR1135: 1e-17 PMRD bdi-miR1135: 1e-17 microPC miR1132: 0.0001 | UniProt no hits RFAM MIR1122: 4e-36 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
