ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCCCTCCGTCTCATAATAA miRNA* AATATGGTACGGAAGAAGTAC mismatches: 5 bulges: 0 |
pre-miRNA
CCAAAAAATGTACTCCCTCCGTCTCATAATAAGTGACTTTCTATTACACGTATCTAGACGCTTTTTAGACATAAATACATCCATATTTTGACAAATTTGA
GTCACTTAATATGGTACGGAAGAAGTACATCCATAG
dot-bracket secondary structure
.......(((((((...(((((.(((((.((((((((((...(((.((.((.((((((.....)))))).))(((((......)))))))...)))..))
)))))))).))))).)))))...)))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CCAAAAAATGTACTCCCTCCGTCTCATAATAAGTGACTTTCTATTACACGTATCTAGACGCTTTTTAGACATAAATACATCCATATTTTGACAAATTTGA
GTCACTTAATATGGTACGGAAGAAGTACATCCATAG
dot-bracket secondary structure
.......(((((((...(((((.(((((.((((((((((...(((.((.((.((((((.....)))))).))(((((......)))))))...)))..))
)))))))).))))).)))))...)))))))......
SIMILARITIES| miRBase bdi-MIR5171: 0.000000000007 PMRD bdi-miR1122: 0.00000000003 microPC miR1436: 0.0004 | UniProt no hits RFAM MIR1122: 1e-35 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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