ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTACTCCCTCCGTTCCATA miRNA* AGGAACAGAGGTAATAGTAAC mismatches: 5 bulges: 0 |
pre-miRNA
AAGAGATTAACTACTACTCCCTCCGTTCCATAATATAGGACGATTTGGCAAACTAATTTAGTTTACCAAAACATCTTACATTAAGGAACAGAGGTAATAG
TAACTAGCAAAT
dot-bracket secondary structure
((....))...(((((...((((.(((((.((((.(((((...(((((.((((((...)))))).)))))...))))).)))).))))).))))...)))
))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGAGATTAACTACTACTCCCTCCGTTCCATAATATAGGACGATTTGGCAAACTAATTTAGTTTACCAAAACATCTTACATTAAGGAACAGAGGTAATAG
TAACTAGCAAAT
dot-bracket secondary structure
((....))...(((((...((((.(((((.((((.(((((...(((((.((((((...)))))).)))))...))))).)))).))))).))))...)))
))..........
SIMILARITIES| miRBase tae-MIR1137: 0.00002 PMRD tae-miR1137: 0.00002 microPC miR1436: 0.000005 | UniProt no hits RFAM MIR1122: 0.000006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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