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ABOUT THIS RECORD
ID:
MNEST003099
species:
Brachypodium distachyon
miRNA family:
MIR444
source:
miRNEST
Taxonomy by NCBI:
Brachypodium distachyon
Brachypodium
Brachypodieae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCAGTTGCTGCCTCAAGCTT
miRNA*
GCATGAGGCGACAACTGCATT
mismatches:
2
bulges:
0
View larger
pre-miRNA
TGATTCGCATGCGGCGGCACCAA
GCATGAGGCGACAACTGCATT
ACTTGCTGGGAAGACGCAAGTATGACAGCGAGACATGCATTACTTGCGGGAAAGGC
GCAAAACGAATAGAAGATCATCATACTTGTGGCTTTCTTGCAAGTTG
TGCAGTTGCTGCCTCAAGCTT
GCTGCCTCCCTTTGCCAGAG
dot-bracket secondary structure
......(((...((.((((.(((
((.(((((((.(((((((((.
((((((.((((((.(((((((((((..(((.....((((.....)))).......)
)).....((........)).))))))))))).)))))).)))))).)
)))))))).))))))).))))
).)))).))...))).....
SIMILARITIES
miRBase
tae-MIR444
:
6e-47
PMRD
tae-miR444
:
6e-47
microPC
miR444
:
4e-36
UniProt
sp|Q6Z6W2|MAD57_ORYSJ: 0.00006
RFAM
MIR444: 4e-36
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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