ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGTGGCTTTCTTGCAAGTTG miRNA* ACTTGCTGGGAAGACGCAAGT mismatches: 3 bulges: 0 |
pre-miRNA
GATTCGCATGCGGCGGCACCAAGCATGAGGCGACAACTGCATTACTTGCTGGGAAGACGCAAGTATGACAGCGAGACATGCATTACTTGCGGGAAAGGCG
CAAAACGAATAGAAGATCATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGA
dot-bracket secondary structure
.....(((...((.((((.(((((.(((((((.(((((((((.((((((.((((((.(((((((((((..(((.....((((.....)))).......))
).....((........)).))))))))))).)))))).)))))).))))))))).))))))).))))).)))).))...)))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATTCGCATGCGGCGGCACCAAGCATGAGGCGACAACTGCATTACTTGCTGGGAAGACGCAAGTATGACAGCGAGACATGCATTACTTGCGGGAAAGGCG
CAAAACGAATAGAAGATCATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGA
dot-bracket secondary structure
.....(((...((.((((.(((((.(((((((.(((((((((.((((((.((((((.(((((((((((..(((.....((((.....)))).......))
).....((........)).))))))))))).)))))).)))))).))))))))).))))))).))))).)))).))...)))....
SIMILARITIES| miRBase tae-MIR444: 6e-47 PMRD tae-miR444: 6e-47 microPC miR444: 3e-36 | UniProt sp|Q6Z6W2|MAD57_ORYSJ: 0.0001 RFAM MIR444: 4e-36 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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