ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCCTCTTCCGCTTCAG miRNA* GAGGCGGCGGCCGACGAGAA mismatches: 4 bulges: 1 |
pre-miRNA
TCTTCAGATTCTTCTATTTCTTCCTCTTCCTCTTCCGCTTCAGCTACATTCTTCTTAAATGAGCGTGGGCGCCCTGAAGTTCCAGCAGCGATCTCCTCCG
GCGTGGAGAAGTTGCGGCGGCCAGTGGGCTTGCCCTTGAACTTGCCCCTGCCCATGGTTGAGGCGGCGGCCGACGAGAAGAGAGGAGGCGAGGCGGCG
dot-bracket secondary structure
.((((...((((((....(((((.((.((..((.(((((((((((.((((.......))))...(((((((.....((((((..(((((..(((((....
....))))).)))))(((((((....))).))))...)))))).....)))))))))))))))))).))..)).)))))))))))))..)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCTTCAGATTCTTCTATTTCTTCCTCTTCCTCTTCCGCTTCAGCTACATTCTTCTTAAATGAGCGTGGGCGCCCTGAAGTTCCAGCAGCGATCTCCTCCG
GCGTGGAGAAGTTGCGGCGGCCAGTGGGCTTGCCCTTGAACTTGCCCCTGCCCATGGTTGAGGCGGCGGCCGACGAGAAGAGAGGAGGCGAGGCGGCG
dot-bracket secondary structure
.((((...((((((....(((((.((.((..((.(((((((((((.((((.......))))...(((((((.....((((((..(((((..(((((....
....))))).)))))(((((((....))).))))...)))))).....)))))))))))))))))).))..)).)))))))))))))..)))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
